rs46632490 SNP Detail

Summary

• ID
  rs46632490
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152987768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATAAAC CCACTACATA
  CACATGAATA ATGAAAAAAA TATGCCGGAC ATTGCTCCCG GGGTGTGTCT GAGTCATGAA
  ACCTGGGTGT TGCTGAGTCA TGGAACACTG AGTCTTACCT TACTTTGAGA CACACTGAAA
  GAAGGGTGCC TGGGTGAAAA GAGCAGAGGT TTAAAGACCA TTCCTGAGAC AGCCGGTGGG
  G
  CTTCTGGGGC ATCCCCACAT AAAACAGGCA GTGAACACCT GCCTCTCCAA ATTCCAATCT
  TTGTCAGCAC GTGGTGCCAC CAAAAGAGGC ACAGCTTCAT CTCTGGCACA AGGCCAGCCA
  TCCCGTCTTC CCTCTGGTGG CTCTCTCACC GGGTGCAGTG CAAGGTTGTC AAGCAAGACT
  GAAATCTGAT TGATTTCCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136107428	ENSMUSSNP3084439	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46632490					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152987768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant