rs46630214 SNP Detail

Summary

• ID
  rs46630214
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101866167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTGCT GAACAAACTC
  AGGGCCATAA GCTATGCAAG CAGTCAGTCT ATCAACTGAG CTACGTGTCC AGGCCCTGGC
  CTTTATTTTT AAATGCAAAT CTTTCTTTCA AAACACAAAA GAACTCTGCT TGGTATTAAG
  GAATACAATC AGATATAAAA ATTTTCAGCA GTCACCAACA GAGATAATCA CTACCGACAG
  W
  CCAGTGTTTT TTTCCCTCTG GCTGGCCCCT TAAATTTCTG TTTGCAGAGG GAAGCTCCCA
  GGACACATTG TGTAAGCACT GGACCTAGCT GTGGAATGGT TACAAGTGTC CAAATTATCT
  CAACTATCCT ATGTCCTTTA TATGTGAGTC CTTTGTGGAC TGTGACTACA CAGAGTTCTT
  TCTTCTTTCC AGTAGAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147097727	ENSMUSSNP7020551	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss320433808	CHEV_2_101875979	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46630214					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101866167 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	1791 bp distal
Rr561614	regulatory region 561614	1027 bp distal
Rr561615	regulatory region 561615	599 bp proximal
Rr561616	regulatory region 561616	1212 bp proximal