rs46623993 SNP Detail

Summary

• ID
  rs46623993
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGAATTATTT AAAGATTTTG GTTTTTAGTC TTTCTTATAT
  TACATCTAGA CCACAGCTGC CAGAGCATCC TCTCTTCCAA GTCCTTCCCT TCTCCCTACC
  C
  AAATACACTT TTCTGGAATT TCCTTTCATA AAGAAAGCAA GCCTTCTACA ATATCATCTC
  CATATAGCAT ATCAGGTTAC AGTAAGACTT GCCAGATCTC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss138784463	ENSMUSSNP1292236	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46623993					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441537 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1090 bp downstream
Tssr3975	transcription start site region 3975	1574 bp downstream
Tssr118082	transcription start site region 118082	1589 bp downstream