rs46620297 SNP Detail

Summary

• ID
  rs46620297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148454564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTGACA TGGGTGTTGG
  GAACTGAATT TGAGTCCTCT GAAAAAGCAG CTACTGTTCT TAACTGATGA TCCATCTCTC
  CACCCTGAGA CTTGTTTCCT CATAGCTTTA TGGCTTTGAA CTTTAAGATG AAGGTGCATG
  CAGGGCTGGT TTCTGGAAAG GTCTCTCCCC ATAGCTTGCA GAGAACCCCT TTTTTTCCTG
  K
  ATCCTCTGAT GGCTTCTTCT CTGTGTGCCT CTGTCCTGGT AGCTCTTTTT CTTCTTCTTG
  TAAGCATGCC AACCATTTAC TGTTCTCCAA AGGTCCATGC AATAAAGGTT CAGACCTCAG
  AGTGATGCTA CTGGAAGGTG GTGAGACCTT CCTTAAGAAG TGAGGACTGA GAGCTGGAGA
  GACAGCTCCG AGGTTGACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148004273	ENSMUSSNP6037614	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321419756	CHEV_4_147744216	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46620297					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148454564 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Rr604663	regulatory region 604663	1246 bp proximal