rs46619810 SNP Detail

Summary

• ID
  rs46619810
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38540787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACTTAAA TTTTATGTTT ATATTAATGT TTTAAGCAGA
  TTTATATGCT GCAAAGTTAT ATTTCTTCCA TTTTAATCAT TTATATATAA AATAAAGTTT
  T
  ATCCAGTTAG GATCAGCACT TCCAACCCAA AATTTCACCC ACAAACTAAG GTATTAGAAA
  GCATAATAAA ATTTCAAATT GATCCTTTTG TATTTATAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134837248	ENSMUSSNP5241760	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320719976	CHEV_3_38385560	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46619810					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38540787 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	1794 bp upstream
Cpgi13104	CpG island 13104	1232 bp distal
Gm65619	predicted gene, 65619	1155 bp downstream
Rr397648	regulatory region 397648	1588 bp downstream
Rr575676	regulatory region 575676	1523 bp distal
Rr575677	regulatory region 575677	803 bp distal
Tssr28929	transcription start site region 28929	1427 bp downstream
Tssr33057	transcription start site region 33057	1847 bp upstream
Tssr33058	transcription start site region 33058	1816 bp upstream
Tssr33059	transcription start site region 33059	1774 bp upstream