rs46619668 SNP Detail

Summary

• ID
  rs46619668
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156486983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG TAGCCGGGCG TGGTGGTGCA
  C
  GCCTTTAATC CCAGCACTCG AGAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145801437	ENSMUSSNP1367143	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46619668					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156486983 () rs orientation: forward

Symbol	Name	Function Class
Rr421217	regulatory region 421217	1953 bp distal
Rr421218	regulatory region 421218	1338 bp distal
Rr421219	regulatory region 421219	287 bp distal
Rr421220	regulatory region 421220	540 bp proximal
Rr421221	regulatory region 421221	1454 bp proximal
Tor3a	torsin family 3, member A	Intron