rs46619172 SNP Detail

Summary

• ID
  rs46619172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85354696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCGAGCT TCCCGGAATT
  CTTTCTTCAC CTTTCATCTC TGAAGTAAGA ACACTGGGAG TACAAATATG TGCTTTGTAC
  CACACCCAGC TTTATGTGGG GTGTGGGGAT TCAAATCAGG GTCATCTCCA CTGTTGGCAA
  TGAGGTAGAA GCTTTGTGTC ACAACTAAGG CTCTAGATTC CATCTCTAAC ACCACATAAG
  Y
  TAGGTGTGGG AGAACACTCC TTTATTCCTG GCACTTCAGA GATAGGAGAC GGAGGATCAG
  AAGAGGTTAT CCTTGGCTAC ACACTGAATG TAAGTCCAAC CTAAGGTACA AGAGACCTTG
  TCTCCATAAA AAAAAAAAAA TTGTTATTTG AAAAATACAG AAAAGAAAAT AGAAAAAGCA
  CCGGCCAGAA ATCAACACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133351658	ENSMUSSNP1539716	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46619172					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85354696 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Rr633196	regulatory region 633196	within coordinates