rs46618082 SNP Detail

Summary

• ID
  rs46618082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194859185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACTGAAGATT TGTGAAGCAC AACTGCAGGT GACTAGGGGC
  GGAAGAGGCA GAGAGGGGCG GTCCCCGGGA AGTCTGCTTT TGGTTCAGGC TGGGTTCTGC
  R
  ACGCCTGGCT TTCCTATATT TTGTTGATTG AGCAGCCAAG TACATTAACT TTCTCGTTCC
  CACCCCCCTA CATCTGAAAC AAGAATTTCA CAAAATAATA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146544344	ENSMUSSNP219562	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46618082					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194859185 () rs orientation: forward

Symbol	Name	Function Class
Cr2	complement receptor 2	161 bp upstream
Rr426767	regulatory region 426767	within coordinates
Rr426768	regulatory region 426768	102 bp distal
Rr426769	regulatory region 426769	within coordinates
Tssr384	transcription start site region 384	195 bp upstream
Tssr385	transcription start site region 385	183 bp upstream
Tssr15875	transcription start site region 15875	231 bp upstream
Tssr15876	transcription start site region 15876	152 bp upstream
Tssr15877	transcription start site region 15877	94 bp upstream