rs46618040 SNP Detail

Summary

• ID
  rs46618040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGTTAA CTTTCATTTT
  GATGAAATAT GTCAGAGAAG GTCGGAATAC AGGAAACAAT CCAAAACGTT TAAAATATAT
  ATATAATCGT GTAACATTAC TGGCAAGGAG CTTCAGAAAA TATCTTCAGA AGCCCTTCCT
  ATTAGTGATG GGAAATAGGG GACTTCCGCT GAAATAACAT ACCTGCTGAC ATCCTAAGAT
  K
  CCAGTGAAAC TGACCATGAC TATTTACAAA AGGCACAGCG AGGAAAAACA GCATGACTTG
  TTCATCAAAG GTGACTGTCA CCAGAACTTA AAAACAACCA ATCATGAGAA AACCTGCTTG
  GTGCATGTAT AACTATTCTG AATTTTTAGG CACGCTGCTA CAGTTTTAAG CAATCCATTT
  AGTTTAACAT TGTCAAGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134784776	ENSMUSSNP1394249	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320703497	CHEV_3_36511390	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46618040					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666617 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	628 bp proximal
Rr575383	regulatory region 575383	153 bp proximal
Rr575384	regulatory region 575384	807 bp proximal
Rr575385	regulatory region 575385	960 bp proximal
Tssr28874	transcription start site region 28874	1014 bp upstream
Tssr33039	transcription start site region 33039	871 bp downstream
Tssr33040	transcription start site region 33040	902 bp downstream
Tssr33041	transcription start site region 33041	950 bp downstream
Tssr33042	transcription start site region 33042	993 bp downstream
Tssr33043	transcription start site region 33043	1021 bp downstream