rs46617550 SNP Detail

Summary

• ID
  rs46617550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATCAA GTTAAAATCC
  TGCCACCCGG AAGTCATCAT ATCATTTATG CATACATGTA ATGTATATGT ATCATCACAT
  ATAGTGTGTG TCCACATATG TGCACATGTG ATGGTGTACT TGTGTAATTC CAGTGGTTGG
  AAATGTTGAC TAAGGAGAAA GACAAGTTCA GGGCTAGCCT GGGCAACTTA GTAAGACACC
  Y
  AACCTCACGC ATGCTAAGTG TGTCTTCCAT CATTGAGCTG CACATTCCTG GGGGTGCATA
  TTCAATAAAG ACATTTTTCT TCTTTTCAGT GTGTCTGTGG CGAGTGCATG TGTGTATGTA
  CATTCACATG TGTGTGGGCA TCCCTGTGCA GATGTGTATG CGTGTATGTA TATGTAATGT
  GTATAGATAT GTGCATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380388	NES15883696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46617550					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380388	NES15883696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1586 bp distal
Rr574360	regulatory region 574360			158 bp distal
Rr574361	regulatory region 574361			421 bp proximal
Rr574362	regulatory region 574362			1499 bp proximal
Tssr28607	transcription start site region 28607			1953 bp downstream
Tssr28608	transcription start site region 28608			1921 bp downstream
Tssr28609	transcription start site region 28609			1904 bp downstream
Tssr28610	transcription start site region 28610			1770 bp upstream
Tssr32839	transcription start site region 32839			1568 bp downstream
Tssr32840	transcription start site region 32840			1612 bp downstream