rs46617190 SNP Detail

Summary

• ID
  rs46617190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38343560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTCTGT GTGTGTAAGT
  AATGAGAGCA AAGGAAAGAA TGCAGGCAGG GTCATTGAGT TCCTGAGTCT GTGATATTTA
  CAGAGTCAAG GATTTCTGCT GGGTCTTTTG CTTGTCTCTG CAGGGAGAAA ATCTGAGAGG
  CAAAGCTGAG ACATAGGCTG CCTGGATCCT CACACAAGGT TGACTCACTG GCAGTGTAAC
  R
  TGGTTCGTCT TTCATAGTTT TTTCTAAAAA AAAAAAAAAA AAAAAAAAAA AAGATGCTCT
  CAGTTATTCT ATCCTCAGTG GTTTGCTTTG ATCCATCCCA CTTAAAGCCA GAGCCAGTCT
  CTTCTGCTGT GCTTCTGAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCATGCGTGT
  TTTCCAAATA AAGTAGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss60391337	NES15888535	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs46617190					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391337	NES15888535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38343560 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	37 bp distal