rs46612473 SNP Detail

Summary

• ID
  rs46612473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134948138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGGGACCC TATACTCACA
  AACTCACGGT AGCTGGGGTC ACCTGCACAA AGCATTTCTG CATGGGAATG GGGAGACTTG
  TGAACCCCCA TCCCTGGCTG AGTCAGTTTT CTCTGCAGGT GTGGCTACTG GTAGGTCACC
  CATGCTCCAG TGCACAGCCC CACACCCAGG AAGATGTGAA CAGAAAATTG TAAACAGTGG
  R
  TTGCTAAAAA CAAAACCTGA AGCTGGAAGT GTGGGGAGAT GGGGTGGATC TGGTAGAGTT
  GGTGGGAGGA GAGGAGTGAA CAGGACCAAA GTACATTGTG TGCATGTGTG ACAGTCTCAA
  AGAACGAAAA GATCCTATCT TTTAAAAATT ATCCCTGTCA ACCTTAGCTT TTCCAATAAA
  CATAACTTGC TCTGTTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147541706	ENSMUSSNP1067645	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46612473					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134948138 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	872 bp distal
Rr601952	regulatory region 601952	990 bp distal
Rr601953	regulatory region 601953	772 bp proximal