rs46608757 SNP Detail

Summary

• ID
  rs46608757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59802698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCTGCT GTACCAAGGG
  AGAAGATGGG ACAATGCCTT GTCGGTACTG AGCACTCTCA TGCAGTCCTG GCAGAGTTGC
  CAGTAAGGGT GACATGGTTC TTCTTTGGCA AAATACTAAA TTGTGGGGCC TGGGGCCCTA
  TCTCCTGATA GGTCCCAGGC TTAGTGCCTG CCACTCCGTG TGGATGGGAA AGGGCCCATG
  Y
  GACTGGGTCT TGCTTCAAAG GTGGATAGTT TATTCTGGGG CGAGTATGTC CGGCCATGTC
  CTGAGGAACA AAATGGGTTG GGGGTACTCT GAAAGACATG CTCTACTGTG GGAGTTAATC
  ATATATGTTT TAAATCGAGA CAGGGACTCA CTATGTAGCC CTGGCTGTCC TGGAATTCAC
  TTATGTAGGC CAAGCTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403198	ENSMUSSNP5461199	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46608757					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59802698 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	708 bp upstream
Rr593142	regulatory region 593142	within coordinates