rs46606957 SNP Detail

Summary

• ID
  rs46606957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36120414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG AGCTCTTCCT GGGCAACATC
  R
  AGCAGGTAGG AGGCGAGGCC GGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60387996	NES15892824	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	A	G	A		G	A	A	G
ss134777631	ENSMUSSNP4522974	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46606957					SNP	G	G	G	G	G	G	G	A	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60387996	NES15892824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36120414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad9	acyl-Coenzyme A dehydrogenase family, member 9			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13079	CpG island 13079			within coordinates
Rr397642	regulatory region 397642			1418 bp downstream
Rr575304	regulatory region 575304			1203 bp distal
Rr575305	regulatory region 575305			1063 bp distal
Rr575306	regulatory region 575306			883 bp distal
Rr575307	regulatory region 575307			188 bp distal
Tssr28859	transcription start site region 28859			261 bp downstream
Tssr28860	transcription start site region 28860			202 bp downstream
Tssr28861	transcription start site region 28861			163 bp downstream
Tssr28862	transcription start site region 28862			147 bp downstream