rs46606221 SNP Detail

Summary

• ID
  rs46606221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGGAGCC CAGGGAAAGC CACCTTCAAA AGGAGTTTGG
  AAAACATTAT TCTTCCTGAC TGGAGTCCTG AAGGAACCTC ATTAGGCCTG CTGACCAAAC
  R
  AGTACCTCCC TGGTCAGTCG CCTGCCGCTT AAGTCATTTG CTTAAAACAG GAATGTGTGG
  CTGAGCAGAG AGGAAAGGCA CTGAGTTTGG AGGGGAATGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803578	NES16473397	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46606221					SNP	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803578	NES16473397	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718037 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1780 bp upstream
Rr419278	regulatory region 419278	1149 bp distal
Rr419279	regulatory region 419279	1331 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	273 bp distal
Rr419282	regulatory region 419282	1938 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron