rs46600258 SNP Detail

Summary

• ID
  rs46600258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139301098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGTGA GCTAATGCTT
  GCAGTGGGTA CAGGAGACAC TTGGAGATCG CAGGGAATAC TGGTTTTTAG GGTGGTAGGT
  GTGAAGGATA GATGGCTGAA AGGACGGAAG ATGGATGGGT CCAAATAAGT GTCCTCCAAA
  TAGGTGGTAC TCCATATTGC AGCAAGGCAT TCGGGAGAAT TGATGGATAG ACAGACCCTC
  W
  GCTCTCAGGG CTCAGCTACA GCGCCGACTG TGACAATGTG GTGATAGGTG ACAGGAGATG
  GTTAGTCAGG GTTGTGAGGA CAAGCATGTT GGGAGGCTCA TTGCTTTCTC TTCCCCAGCT
  TGTCTCACAT CCCCGCTTCT GGGTTTGCCG TGGACTAGCA GGCTCAAAGG CTGCGAGAAG
  CCCTGATCCT GCCTGGTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147674716	ENSMUSSNP3886285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46600258					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139301098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	within coordinates
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	443 bp proximal
Rr603245	regulatory region 603245	744 bp proximal
Rr603246	regulatory region 603246	837 bp proximal
Tssr39955	transcription start site region 39955	857 bp upstream
Tssr39956	transcription start site region 39956	910 bp upstream