rs46599070 SNP Detail

Summary

• ID
  rs46599070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136009372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGACTG CTGGGGTGTC
  ACCTCCCACC TTCCCAGTGA GAAGGGGGTG GTGGGCGGGG ACATGACGGG ATGTCCGGCT
  AGGTGCAGCT GTAAGGGCAA GGGAGACCCA GGTCATTTCC TTTGAAATAG AACGTTCGAA
  AGTAGGATTA CAAACACAGA GACATAGGGT TGTTTTTTGT TTTGTTTTGT TTTTTAAAGA
  W
  TTGTTTATTT ATCTTATGCA TATGAGTACA CTGTAGCTGT CTTCAGATAC ACCAGAAGAG
  GACACCGGAT CTCATTACAG ATGGTTGTGA GCCATTATGT GGTTGCTGGG ATTTGAACTC
  AGGACCTCTG GAGGAGCAGT CAGTGCTCTT AACCGCTGAG CCATCTCTCC AGCCCGAGAC
  ATAGTTTTAA ATGCTTAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147564504	ENSMUSSNP7083569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46599070					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136009372 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	506 bp proximal
Rr602340	regulatory region 602340	1563 bp proximal