rs46597716 SNP Detail

Summary

• ID
  rs46597716
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120525281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT AGGACTCCAG GAACTGGGGG
  K
  GGGGGGTCCC CTGAAGATCC AGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147346030	ENSMUSSNP4732587	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46597716					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120525281 () rs orientation: forward

Symbol	Name	Function Class
Cited4	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	264 bp downstream
Cpgi14717	CpG island 14717	389 bp distal
Rr398439	regulatory region 398439	1447 bp downstream
Rr598840	regulatory region 598840	1502 bp distal
Rr598841	regulatory region 598841	647 bp proximal
Rr598842	regulatory region 598842	1467 bp proximal
Tssr38800	transcription start site region 38800	1505 bp downstream
Tssr38801	transcription start site region 38801	1461 bp downstream
Tssr38802	transcription start site region 38802	1141 bp downstream
Tssr38803	transcription start site region 38803	912 bp downstream