rs46590687 SNP Detail

Summary

• ID
  rs46590687
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36667922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA CATGCGTGTT GCCTTCTAAG
  T
  AGGCCAGGGC CTTGGGACTC CCATG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134784852	ENSMUSSNP637054	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320703519	CHEV_3_36512695	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46590687					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36667922 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	296 bp upstream
Cpgi13088	CpG island 13088	123 bp distal
Rr575383	regulatory region 575383	499 bp distal
Rr575384	regulatory region 575384	within coordinates
Rr575385	regulatory region 575385	324 bp distal
Tssr28874	transcription start site region 28874	287 bp downstream
Tssr33039	transcription start site region 33039	406 bp upstream
Tssr33040	transcription start site region 33040	376 bp upstream
Tssr33041	transcription start site region 33041	344 bp upstream
Tssr33042	transcription start site region 33042	302 bp upstream
Tssr33043	transcription start site region 33043	273 bp upstream