rs46590078 SNP Detail

Summary

• ID
  rs46590078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:47440337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTAGCCATTC TGACTGCTGT GAAGTGGAAT CTCAGAGTTG
  TTTTGATTTC CATTTCCTGA TGACTAAGGA TTTTTAGGAT TTCCTTAGGT GCTTCTCATT
  Y
  ATTTGGTGTT CCTCAGTTGA GAATTTTTTG TTTATCTCTA TATCCCATTT GTTAATAGGG
  TTATTTGGTT CTCTAGACTC TAACTTCTTG AGTTCTTTGT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146653306	ENSMUSSNP4262817	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46590078					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:47440337 () rs orientation: forward

Symbol	Name	Function Class
Rr576073	regulatory region 576073	1872 bp distal