rs46590023 SNP Detail

Summary

• ID
  rs46590023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150202690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACG TAAAATGACA TAGATATTTT
  W
  AAATATTTTA GAAGCAACTT AATAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148047955	ENSMUSSNP4358372	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		A
ss321428276	CHEV_4_149492342	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46590023					SNP	T	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150202690 () rs orientation: forward

Symbol	Name	Function Class
Gm13093	predicted gene 13093	within coordinates
Rr605185	regulatory region 605185	593 bp distal
Rr605186	regulatory region 605186	770 bp proximal
Rr605187	regulatory region 605187	1020 bp proximal
Rr605188	regulatory region 605188	1061 bp proximal
Rr605189	regulatory region 605189	1420 bp proximal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	1111 bp upstream
Tssr40372	transcription start site region 40372	1042 bp upstream
Tssr40373	transcription start site region 40373	1105 bp upstream