rs46588977 SNP Detail

Summary

• ID
  rs46588977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3966326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAAGTT ATGTATGGTT
  CCTATGAACA AAAACACTCA CTTAGGAAAA TATGTACAGT GACCCAAATC AAGAATTCTA
  CATTGATAAA TAGTTATTAT CCAATCTATA TCACATTGGA GCTTGGCATC TGACCCAGTA
  ACATCTTATA CAGGATTTTT TTTTTTTATG GTAAAAATCC AGTCCTGAGT CTGGGTTCTA
  Y
  GAGTCTTCAG TTTTGTCTCA TCTAGGTGAG TCTCGAGTTT TTCGCCTTTC ATGCCTGATG
  ATTTTAAGAG TATAGACTAC TTATTTGTAG AAGTTCTCCC TAATTTGGCC ATCCCATTAC
  TGCCTCATTA CTGTAAGGCT TATGTTGTGT TGAGAGGAGC GCTGATAAGG CTGCCATGTC
  CTCTGAATGT TGTATCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145944909	ENSMUSSNP3203285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46588977					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3966326 () rs orientation: forward

Symbol	Name	Function Class
Rr588254	regulatory region 588254	1035 bp proximal
Rr588255	regulatory region 588255	1388 bp proximal