rs46588682 SNP Detail

Summary

• ID
  rs46588682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120899557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTAGCA GGCCGGCAGG
  GGGGTTGCTA GGCTCTGTGC CTTTGGAGCA GGATCACCCA GAAGGTGCTC TGTCCGTGAT
  ATACTTATCT TGCTGCTAGG CAAGAAACAG ATAACATCAT CATGGGGAAG ACTGCTTTAC
  TGAGGGATTC CCAAGTCTGC CAGCATCAGG AAACAGGGTA TTCACCACAC CAGGCGCCCG
  Y
  GTTAGGACAA AGGAGCAACC TCAGAATGAG TAAATGTCCA AATCAAGTTG TATTTTTATT
  TTTATCTCAT TTTTTTCTTT TCTTTCTTTC TGTTTTTGCT TTTGTTTGAT TGGTTGGTTG
  TTCTTTTGGT TGGCTGGTTG GTTGGCTAGT TGGGTTTTGG GTTGGCTTTG GTTTGGGGTT
  TGGGTTTTTT TATTTGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60441577	NES15944817	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46588682					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441577	NES15944817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120899557 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	624 bp upstream
Rr397968	regulatory region 397968	766 bp downstream
Rr584004	regulatory region 584004	316 bp distal
Rr584005	regulatory region 584005	880 bp distal