rs46585363 SNP Detail

Summary

• ID
  rs46585363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135675612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATGCAC CACCAGGTGA
  GCTATCTGAC TTGGGTCTGA GAACCCTACT CAGATCTTCT GTGGAGCCAT CTCTTCGACC
  CTGGGCTTTT TAAAAATTTC TCACATATCT CAGGCTGACC TCAAGTTTGC TGTGTAGCAA
  CTTGAAAGCA GCCATGAGCT TCTGATTCCC CCTGCTTCCA TCTCCCAAGC GCTGGGCCTC
  R
  GGCCTCGGGC CGCGAGCCAC CACACCTGGC TGGGTTGTTG TGTTTAGAGC TGTGTGCTGG
  AGGAAGTGGA ACTAAGTTCA CTGTGTTCCA GAAAAGGAAG TTGGAAGCAG GCTCTGCTTC
  AGTGTGTACT CACTGAGCCT CTGCTATGTC TCAGGGCCTT GGGAAGAGCA ATGCACAGAT
  CCAGTCCCTG ACCTGTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147554560	ENSMUSSNP2830589	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46585363					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135675612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69275	predicted gene, 69275			1924 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			1935 bp distal
Rr602212	regulatory region 602212			1843 bp distal
Rr602213	regulatory region 602213			866 bp distal
Rr602214	regulatory region 602214			within coordinates
Rr602215	regulatory region 602215			495 bp proximal
Tssr39660	transcription start site region 39660			1806 bp downstream
Tssr39661	transcription start site region 39661			115 bp upstream
Tssr44007	transcription start site region 44007			1919 bp upstream