rs46583649 SNP Detail

Summary

• ID
  rs46583649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC TGCAGCCAAC AGTAAGACAC
  M
  GTCTCAAAAG GACGAGGAAA GGTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147541667	ENSMUSSNP5163644	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321351244	CHEV_4_134776055	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46583649					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947451 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr601951	regulatory region 601951	185 bp distal
Rr601952	regulatory region 601952	303 bp distal
Rr601953	regulatory region 601953	1459 bp proximal
Tssr43965	transcription start site region 43965	1486 bp upstream