rs46582434 SNP Detail

Summary

• ID
  rs46582434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGACGC TTACATTAAC
  TACTTTATTA CTAATGTTTT CAATTTGTGT AATTACATGA AGCATCACAG AAAGGTAATG
  TTCTGTAGTA GAGCCAAACT TACCTCCTCC CCCCCTCAAG AGAAAAGGGG GTCATTATGA
  ATATGTGTTT ATTAAATCAG TGAGTCCTGG ATCTTGGATT ACTTCTGTAA TGCAACTACA
  Y
  GATGTGACAT GCCTCACTTG TATTTCTGTA TTGGTATCAA AATTGTTGGA AATATTGAAG
  ATTCTAAAAG AAGTAAGCTG TACGAAATAG CACTCCTTAG CTAATAATTC AAAGCTGCCT
  GTATACTCAT GAAGAGACAG CTATAGAAAT AAGCACAGGT TAGCATGCTC TGGTGCATAG
  TGCAGAATTA AAATTCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626611	NES15515232	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46582434					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626611	NES15515232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527230 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1498 bp upstream
Trgj4	T cell receptor gamma joining 4	848 bp downstream
Tssr118539	transcription start site region 118539	1362 bp downstream
Tssr118540	transcription start site region 118540	1289 bp downstream
Tssr118541	transcription start site region 118541	1233 bp downstream
Tssr118542	transcription start site region 118542	1155 bp downstream
Tssr118543	transcription start site region 118543	1119 bp downstream
Tssr118544	transcription start site region 118544	1099 bp downstream
Tssr118545	transcription start site region 118545	1073 bp downstream
Tssr118546	transcription start site region 118546	991 bp downstream
Tssr118547	transcription start site region 118547	918 bp downstream
Tssr118548	transcription start site region 118548	899 bp downstream
Tssr118549	transcription start site region 118549	321 bp downstream
Tssr118550	transcription start site region 118550	382 bp upstream
Tssr118551	transcription start site region 118551	1140 bp upstream
Tssr121588	transcription start site region 121588	1351 bp upstream
Tssr121589	transcription start site region 121589	198 bp downstream
Tssr121590	transcription start site region 121590	1264 bp downstream