rs46577889 SNP Detail

Summary

• ID
  rs46577889
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66445987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACCTAG GAAGTGAGGG TCTTCCTCCA GGATGGCTCC
  CCCCAGAGGT TCCAAGTTGT TGTATAGCTG GCACTGGTCC AGCAGGGGGA GTAGTACCCA
  M
  CTTATTCCAG CTTTTCTGTA TTGTGTGTCT ATGTGTCTGT CCCTTTTACA TTCCCTCATT
  GCTCCAGTCA GGACAATCCC TAAGCGATGC TGGACTTGGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss63152004	NES17452085	PERLEGEN	MM_PANEL2	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs46577889					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63152004	NES17452085	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66445987 () rs orientation: forward

Symbol	Name	Function Class
Gm15958	predicted gene 15958	within coordinates
Rr539711	regulatory region 539711	1488 bp distal
Rr539712	regulatory region 539712	47 bp distal
Rr539713	regulatory region 539713	5 bp distal