rs46573648 SNP Detail

Summary

• ID
  rs46573648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51355630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACAGAT ATACATTGTG
  TAAGGAATAA TTCAAGATGA TATATCTCTC AACACATATG CAAAACATTA GATTTGTGAA
  TTCAACACTT AATTGCTATA TAGGTGTTAC TGTACATAAC ATGTGCCACA TTGAACAATA
  CATCTCTGAA GAGAGTTCTT CCTGAGGAGT GAAACTTTAT CGTCTCAGTG CAATTCCTTC
  M
  TCAGATCACA GCCCTCACAT CTGTCATATT TTTCCTTCTT CTAAGTGTTT GGCATCTTTA
  GGGTCCACAC AAAAGATTTT CTCTGCAGAA GTCCTTTTTT TCCATCAACT TTTCAAATAC
  TTATCCGGAA GACATGTTTT AGGAATAAAG ATATTTTATT ATTGAGATTT TTTTTTGTTT
  CACTTATTTC AGGCATTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52289286	NES15305181	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs46573648					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289286	NES15305181	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51355630 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	1078 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	1127 bp upstream
Rr431273	regulatory region 431273	939 bp proximal
Tssr93232	transcription start site region 93232	702 bp upstream
Tssr93233	transcription start site region 93233	1279 bp upstream
Tssr93234	transcription start site region 93234	1305 bp upstream
Tssr93235	transcription start site region 93235	1598 bp upstream
Tssr97553	transcription start site region 97553	900 bp downstream