rs46572079 SNP Detail

Summary

• ID
  rs46572079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGATTC AGGTGGTGGA
  CGTCATCTGA TTCTCTTTTG GATGATTTCT CATCAGTTGA TCCCTCTCCA TTTTCTATCC
  CAGTTTCCTT TGGCCAAAAG TACTAAACAA CACTGTAAAC ATCACCCAGC TTCATACAGC
  TGCAGTAACC CAGTTACCGA GGTCGTGCTC GTGTGTGTGG CCCCCCACTA CTGCTTCCAC
  M
  ATTACTGTCC ATTGCATATT TTATACAATG AATACTGTTA TTTATATATG CATAAAATGA
  TCAAGTTTTT TTCTCTATAC AAAGACATCC TCTTCCAGTG TAAGAGCGAT GTCACTTGGA
  ATGCCAATTC CCTAAGCCCC TTTACTTCCC AGGAGTGGAT TTTGCAATTT TGGAAGCATT
  TATCAGAAGG TAATGCTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042069	ENSMUSSNP3219417	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321009524	CHEV_3_145770024	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46572079					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			931 bp upstream
Rr586924	regulatory region 586924			85 bp proximal
Rr586925	regulatory region 586925			1060 bp proximal
Tssr36027	transcription start site region 36027			929 bp downstream
Tssr36028	transcription start site region 36028			949 bp downstream
Tssr36029	transcription start site region 36029			987 bp downstream