rs46571734 SNP Detail

Summary

• ID
  rs46571734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCCCCCC CTTTTTTTTT TTAATTTTGT TTTGGAAAAA
  AAAAATGTCT TTATCTTCTC AAGTCAAACC TGGTAGTCCC TGCCTACGGT TCCAACATCT
  R
  TGAGCCTGTG AAGTGAAAAT GGGGAAACGA AGGGAGAAGT TTTCAGATCG AAGCCCATAC
  TTGGCCAAGG GTCTGATCCT AGAAGAAATG ACAATCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60440596	NES15939089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G
ss135719323	ENSMUSSNP4599048	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46571734					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440596	NES15939089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	1127 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	135 bp upstream
Rr397974	regulatory region 397974	855 bp upstream
Rr584057	regulatory region 584057	within coordinates
Rr584058	regulatory region 584058	286 bp proximal
Rr584059	regulatory region 584059	874 bp proximal
Rr584060	regulatory region 584060	1980 bp proximal
Tssr31438	transcription start site region 31438	248 bp upstream
Tssr31439	transcription start site region 31439	313 bp upstream