rs46565636 SNP Detail

Summary

• ID
  rs46565636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16140626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTACT TCTGTATTGT
  AAGTCTGCTG CTTATTTTGA GAAATTACGT TCAGATACAA CATTCCCTTG TGTTCACATC
  TGTTTCTCAC CTTTTCACTG ACTCCCTGCC CACCTGTACT GGGACTCTGA TTCTCCCACG
  GAATTGAGGG GCCGACTGAG GCCAGTCCTT GGCAGAGGTT CTTAATACTG ACATGGAAAG
  Y
  GTTCCTGTCT GTCTCTGTCT ATGTGCCTCT GACATACATC AACAATTCTG TTTTGAATAA
  TTCTGTAATT CTTTTCTGAA AAGAGGCCTT AAAAAGTATT TTGTAGTCAG ACAAGTCTAA
  GGCATTTGTG TTTTGGGCTC AAGACCACTC AGTACCTGGA AGACATGTAC CAGGCCATGA
  TCTATGTTTC AATCAAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134641620	ENSMUSSNP5471672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46565636					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16140626 () rs orientation: forward

Symbol	Name	Function Class
Rr374571	regulatory region 374571	within coordinates
Rr573780	regulatory region 573780	188 bp proximal
Rr573781	regulatory region 573781	290 bp proximal
Rr573782	regulatory region 573782	624 bp proximal