rs46564940 SNP Detail

Summary

• ID
  rs46564940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTGGAT GTCCTAGAAC
  TTGCTCTGTA GATCAGGATG ACTTCAACTC AAGAGATCTG CCTGCCTCCT GAGTGCTGAG
  ATCAAAGTTG TGTGCCACCA CCAACTGGCT TCAATGCCAT TCTTGATGCT TGCTTATACA
  AATGTCTCCT GGTTGGAGAA GTTGACAATG AGGGAGAAAG CTCATACTGA GTTTTCTAAA
  R
  GTCAGTCTCA GGACAGACAA TGATGATGCC TAATATTTAT TTACAGCAGC CGTGTGTGCT
  AGGCGTGCGG TATCTTTGCA TGAATAATCT CATTCCATCT TTCCAAGAGT TTCTAAAACA
  GGTTTGATCA TTTTGCCTAC TGTATACTGA AGACAAGCTG AAAGAATTGA GTAACTCACT
  CAATGTCATG TAGCTAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115132	ENSMUSSNP2539763	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438707	CHEV_2_102387935	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46564940					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1988 bp proximal
Rr561703	regulatory region 561703	1853 bp proximal