rs46563854 SNP Detail

Summary

• ID
  rs46563854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18300595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAAATG GTGGAACAGA
  TGGGTCCCAT TGTCTCCAAA GGAAGGGAAG CCTTGGTGAG CTTTTATTTC TTGTCTAACA
  GTTTGGCATT GATTGTGCAC AGTTGAGGTT TGAATACTCT GGTTTATAGA TTCACAATCC
  CGACTAACAA TTCATTCTTG TGATCTGACC CAACTTTCCA TGCCAAGTCC TGAGACTCGT
  R
  CTCTCTGTCC CCAGCGGACA CCGGAATTTC AACAGTTCGA TTATTCTCCA AACCTGGATT
  TCTGAGAAGA GTATGCATTT CTACCTGCAT GTGTTACTCA GTAACAACCA CTCACTTCCA
  TCCGGCTCCC TGGCCACCTC TGTTCACCGG TGGAACATTT TTAGGTCGAA AATATTTTCT
  TGAGATTGGG CTGAACTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60376240	NES15872247	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46563854					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376240	NES15872247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18300595 () rs orientation: forward

Symbol	Name	Function Class
Rr573892	regulatory region 573892	1138 bp distal
Rr573893	regulatory region 573893	1047 bp distal