rs46562857 SNP Detail

Summary

• ID
  rs46562857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:128339454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGCCT GATGCATTCA
  TGGATGTGTG GCCTTCTACT AGTATATAAT CAACCTACCA TGGGCCTGTC CTCTTAGGGA
  ACACCCACTA TCTCTTTCCC AGTGGCTATC AATGGATAAT AGCTTCTCAG ATGGAATTCC
  ACGCCTCCCC TCTGAATGCT GGTAGACAGT CTAGGTTTTA ATTAAGACAT GTGAGTCACA
  Y
  CCCTTCTTCT AAAGGCTCAG GGATCATTGC TAAAGAGGGG TTGGAAAGAC AGTAAGAGCC
  AGAGGTGGTG GATGGCTTAC TATAAGGTTA CAGTGTCTTT GGACACAGCA GGGTAATGAC
  ACACAGGAAC TCACAGCAGC TATGAGAGGA TATCCAAACC CTGTGTAAGC TGCACTCATG
  AGGTTATTGA GCCAGGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135883790	ENSMUSSNP5599246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46562857					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:128339454 () rs orientation: forward

Symbol	Name	Function Class
Rr497	regulatory region 497	within coordinates
Rr584942	regulatory region 584942	409 bp proximal