rs46562381 SNP Detail

Summary

• ID
  rs46562381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141927235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGGGTG ATATCTAGAG
  GGAGGGAGGG ATGGAGAGGT TCTGCAGGGG GGGGGGGTTC TGGAAGGATC AGGGCTGATA
  TTAGAATGTA AAGTGAAGAA GGAAAGAAAG GAAGAAGGAA GGGAGGAAGA AAAGAAAGAG
  GAATGCCTGG GAGGTCACAG TCACAGCAGG GTCACATAGA CCTTTACCAC TGCATGGAGT
  Y
  AGACTGCTAG CTCTCACTGA CAGAGACTGT CCAAGGGCAG CTGGCACATC AAAGAGTGCT
  GTGAGTGGAA GATGCCTCCA TATTCCTGCA CTGACACCCT AACTCTCAGT GTGGTCATAG
  TTCAAGGTAT GATGTCTCAT GGAGATGATC ATGTCATGAA CGACTGCATG GAAGGGGTCT
  TCATAGGACA TGAGCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61088233	NES16613378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46562381					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61088233	NES16613378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141927235 () rs orientation: forward

Symbol	Name	Function Class
Rr586397	regulatory region 586397	1116 bp proximal
Rr586398	regulatory region 586398	1373 bp proximal