rs46561654 SNP Detail

Summary

• ID
  rs46561654
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105346922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAGTA TATAATACAA
  TTTTCTCAGA AATGGATACC AGTTTTTTTG AAGCAACAAT TAAAATGGTT GAAAATTAAA
  AATACTCTTT TCTCCATGTT TGACTAGACT ATACTTTTCA AAACTAGAAA GAAAATAAAA
  TCACCTAATT ACTACTTTTA TACAACCCTG AACTTGTACT TAGCTTTGAC TTTACCTTAG
  A
  AAAAAAAATC TACTTAAACT AAAAGAGAAA TCCTAACACC ACTTATATTC CTAATTAAAT
  TAATTACCCT CCTAACCCAA GTGCTACACA GAGCAAACAG ATGCTGGCCA CACCGCTCAC
  CTTGGCCCAG CTAACACACA CAGCTGGTCA CATGTGTTCA AATGCTCCAA CCGCACTTCC
  TGCAACGTCA TCAAGCTTAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136917779	ENSMUSSNP5910858	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs46561654					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105346922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			797 bp upstream
Rr686149	regulatory region 686149			1727 bp distal
Tssr86838	transcription start site region 86838			765 bp upstream
Tssr86839	transcription start site region 86839			791 bp upstream
Tssr86840	transcription start site region 86840			812 bp upstream