rs46560359 SNP Detail

Summary

• ID
  rs46560359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138282138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGTCAGT TCATTCTATC
  TCCCCACCCC CACCCACTCC CACAATTCCC GAGACAAGGT CTCACTATGT AGCTCTGGCT
  GTCATGAAAC TTACTATGTA GACCAGGCCT GCCTTTGCCT CCTGAGTAGC GAGATTAAAG
  ACATGAACCA CTACATCCGA CCCATTCCGT ACTTTTTCTT CTTTAGCTCT GTTTTTCTCT
  Y
  TTGGCGTCAG TGACCGTCTC TGCTTAACCC CCAGCCGTAG GTCTCAGGCT TCCAGGGTTC
  GGGGATCCCC ACGGGCCTGT GCCATTCTCT GGGAAGTGGA GGCGTCACCA CCGGCCTGCG
  AGTCCTCGTG CCTCCTGCCC GCATAATGCG CTCTAATATT TATTTACATG CCTTTCTGAC
  TATTATTTAT TAAGGTGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147650117	ENSMUSSNP4256787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321374832	CHEV_4_138110742	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46560359					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138282138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15154	CpG island 15154	within coordinates
Cpgi15155	CpG island 15155	645 bp proximal
Rr602963	regulatory region 602963	922 bp distal
Rr602964	regulatory region 602964	within coordinates
Rr602965	regulatory region 602965	231 bp proximal
Rr602966	regulatory region 602966	745 bp proximal