rs46559430 SNP Detail

Summary

• ID
  rs46559430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36532828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGCTCT CTATTTTTTA
  ATTTTATAAT TCTGGTCTTT GTAAACAGCA CCTTCCTATT TTAAGGTAAC TTGTAACTTT
  TGACATGCTG TAATATGTAT GCTGCACATT CTGTAATTTG GTACATTTCA GCTAATCTCT
  CTTTGAATGG GCAGCAAGTG GTTTGATGTG ACTATTTTCT TGTTAATTTA GTATTTTTCA
  Y
  GCTATAAAAC TTTGCTAGGA TAAATAAAAC AGTCTTATGT CACATGCAAG AACATTTTTT
  ACTGGCAAAT TTACTACTTG CTGGAATAAC AGATTTGGTT ATATAAATAA AATATTTGAT
  CCATATTAAT TTACAATCAA GTCAACAGCT TTGGTTGAGT ATGGACACTT CATTGCTAGG
  AAAACAAAAT CTTATTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61597396	NES17553367	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	C	C	C	C		C	C	C	C		T
ss137630560	ENSMUSSNP2246405	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324008677	CHEV_12_37209416	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46559430					SNP	C	T	C	T	T	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597396	NES17553367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36532828 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	341 bp downstream
Rr465183	regulatory region 465183	596 bp proximal