rs46558644 SNP Detail

Summary

• ID
  rs46558644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74794704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AACTTTTGTG GGCATGTATT CAACCTTCTT CACAAACCTA
  CATTTAATTT CATTGACTTG TCTATTTTTT CTTCAGATTT TGCTTTTAAT CCTTGCCACA
  W
  GAGCTGCCTC CCATCAAAAT GTTCATTTTC ATTAGGGATG GGAGGAAGAT TTCTCCGAGG
  GGAGTGTCTG CTTTGAAGGA AGAAGCAGAG GGTTAGAGAA T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146764211	ENSMUSSNP5482254	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46558644					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74794704 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1096 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	within coordinates
Rr559414	regulatory region 559414	174 bp proximal
Rr559415	regulatory region 559415	740 bp proximal
Rr559416	regulatory region 559416	1115 bp proximal