rs46555737 SNP Detail

Summary

• ID
  rs46555737
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132737859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGGCGGGGAC GCGGGGGGGG GGGGGTGGAG TAGAGGGAAT
  CACCACTCTG TTACCGCCCA AGGGTTAAGG AAGGAAGGAA GCTTTGAAAT TATCCAGATG
  C
  TGAATCTACC ACTTTCTAAT CGGGACACCT GGGCTCCGGA ACTCTTATAT CTAAAATAGA
  AATAAGGTCT CGTAGGGTTT TTTCTGCAAG GCTCCAAGGA C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147480650	ENSMUSSNP5525810	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46555737					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132737859 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	938 bp upstream
Cpgi14982	CpG island 14982	231 bp proximal
Rr601151	regulatory region 601151	1965 bp distal
Rr601152	regulatory region 601152	533 bp distal
Rr601153	regulatory region 601153	1211 bp distal
Rr601154	regulatory region 601154	468 bp proximal
Rr601155	regulatory region 601155	1121 bp proximal
Rr601156	regulatory region 601156	1166 bp proximal
Rr601157	regulatory region 601157	1667 bp proximal
Tssr39436	transcription start site region 39436	935 bp upstream
Tssr39437	transcription start site region 39437	970 bp upstream
Tssr39438	transcription start site region 39438	1246 bp upstream