rs46553450 SNP Detail

Summary

• ID
  rs46553450
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACA TAAGATACAA GAATAACAAC
  M
  AACACAAGCA AAATTAACCT AAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320667843	CHEV_3_14874278	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46553450					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939338 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1897 bp downstream
Rr374551	regulatory region 374551	1406 bp upstream
Rr397608	regulatory region 397608	124 bp upstream
Rr573714	regulatory region 573714	191 bp proximal
Rr573715	regulatory region 573715	287 bp proximal
Rr573716	regulatory region 573716	830 bp proximal
Tssr28463	transcription start site region 28463	1980 bp downstream
Tssr28464	transcription start site region 28464	1939 bp downstream
Tssr28465	transcription start site region 28465	1800 bp downstream
Tssr32654	transcription start site region 32654	1741 bp upstream