rs46552735 SNP Detail

Summary

• ID
  rs46552735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATCATG AACTCAGATC
  AGGATTTCCC AGTAGCCTGT GTGTGCAGTT GCTCAGAGCA GAAAAGGGGA AAGAAAGCGC
  TTGGAGGTAG AGCAGTGTTG AGAGGGGAGT GCAGGTGGGT TTACTCTATC CTCCCATCGC
  CTGTTGGGGG AGGGCATACT CGGCCTTATA TGGAGGTGGG TGGCAATTTT TAGGAGTATC
  Y
  CCTTCTATGG ATTTCAGGAA ATAAACTCTG GTCCTAGTGC TTGAACAGTA AACAGCTCTG
  TCATTCTGTT GGGCCCCAGG CCACTCTTCT AATCTGTCTC TGTCTGCCTA ATTTAGGTGA
  CCACAACCAA TACCTGCCCC AGCCCCCCAT TCCAGCCTTC CATGCCACCT TTCTCAGCCT
  CTTCCATAAG CCTCTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115248	ENSMUSSNP2336100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320438738	CHEV_2_102389597	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46552735					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	326 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	572 bp upstream
Rr561703	regulatory region 561703	191 bp proximal
Rr561704	regulatory region 561704	1463 bp proximal
Tssr19094	transcription start site region 19094	605 bp upstream
Tssr19095	transcription start site region 19095	659 bp upstream
Tssr19096	transcription start site region 19096	677 bp upstream
Tssr19097	transcription start site region 19097	698 bp upstream