rs46552142 SNP Detail

Summary

• ID
  rs46552142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17943438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC CTCAGTAGGT TGTTATAGCT
  Y
  TGTGGACAAG AAGCCACAGA CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133025442	ENSMUSSNP4341348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321756625	CHEV_6_17893439	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46552142					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17943438 () rs orientation: forward

Symbol	Name	Function Class
Rr626887	regulatory region 626887	359 bp proximal
St7	suppression of tumorigenicity 7	416 bp downstream