rs46549781 SNP Detail

Summary

• ID
  rs46549781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101470052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGATCTG ATTAGGAGAG
  TCAGGGGAAG GATGTGCTAT AAATCAAGCC CAGAGTCAAA TGCTTCTGAG ATTGTCCTAC
  CATCCTAGCA AGGGGAATTT AATATCGGGC AGTATTTACA GTGCTGCCAA CTGACTAACC
  GAGTGGATGG GAAGGCATCT ACCAAAAGCG CCAGCATGCT CCAGGGAGTA GGAGGGTGGC
  R
  GGAACTTAGC TGTTTATTAG TGCACAGACA TCTGTAAGGA TTAAATGGGA TGAAAGGACT
  GGTGGTTTAG AAGCCTATTA GTTTGCAAAT GACAAAACAG AGAGGGTTTT TAGGATAATA
  CTTAAGTGTG TGTATGTTTT TGACAACTAA ATTACGAATG TCTTCGATGT GCTCCATGCA
  GAAAGCAAAG AAAATGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147079138	ENSMUSSNP2136707	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320429673	CHEV_2_101479864	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46549781					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101470052 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	within coordinates
Tssr25364	transcription start site region 25364	395 bp downstream
Tssr25365	transcription start site region 25365	519 bp downstream
Tssr25366	transcription start site region 25366	1560 bp downstream
Tssr25367	transcription start site region 25367	1856 bp downstream