rs46548098 SNP Detail

Summary

• ID
  rs46548098
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73754960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGGGG AGGGGAGGGA
  GCAGTGGGGT AAGGGATTTG TAAGGGTGGG ACTGGAAAGA GAGGAGGGGA TGTGATCAGG
  AAGTAAAGTG AATTAAAAAA ATAAAATAAA TAAATTTTAA AAGGAAGATT CATATTTTAA
  ACATTTTCTT TATTTTAATC TTTGATGTAC ATTGTTTTAC CTGCATGTAT GTCTGTGTGA
  S
  GGTGTTGGAT CACCTGGAAC AGAAATTAGA AACAGTTGTA AGCTGCCATG TGGGTGCTGG
  GAATTGAACC TGGGTCCTAT GGAAGAGCAG TCAGTGCTCT TAACTACTGA GCCACTGCTC
  CAGCCCAGTT CTCTCATATT TCATTATTTC TCAAATCCAT ATAAGAGCAA GCATTATACC
  CGCTGACATT TCTGTATATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146760172	ENSMUSSNP6209332	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46548098					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73754960 () rs orientation: forward

Symbol	Name	Function Class
Rr559257	regulatory region 559257	511 bp proximal
Rr559258	regulatory region 559258	624 bp proximal
Rr559259	regulatory region 559259	1326 bp proximal