rs46542961 SNP Detail

Summary

• ID
  rs46542961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22495114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCAGCCT AGCCTGGTCC
  ACCGCAAAAA TCGGGCGAAT ATTGTACACT CAAAGCTCTT TCCCAAAGAT GCCATGAATG
  TGGAGGAAAG CAGGGTGGGG TGAGTGGAAT TTTAGGTCAG GCACTTGGGC CCCCTTTTTT
  CTTTTCTTTT TAGTGATCTC CTGTTGAGGT CAACTATGGC TCTTTTCCTG GTCAAAATTT
  R
  ATTAGGTAGG GATACACACC ACACACACAT GTGTATTCAT GTGTGTATAA AATCATATAT
  ATATATATAT ATATATATAT ATATATATAT ATATATATTT AGCTTTCTCT CTTTCTTAAT
  AGCAGTGGCT GTGTATGGAG AGTTTTGTGA GTTAGTAAAA CAACCCCCTA GAGAGAAAAA
  TTTAACCCCA ACTTTTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60871007	NES15983212	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46542961					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871007	NES15983212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22495114 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	156 bp downstream
Rr627113	regulatory region 627113	850 bp distal
Rr627114	regulatory region 627114	985 bp distal
Rr627115	regulatory region 627115	1544 bp proximal