rs46542381 SNP Detail

Summary

• ID
  rs46542381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139517473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAGGCA CTAGAGGGCG
  CTGTCTATAC ACCCCTGACA GGAAGGGGCG GAGCTAGGAA GAAGGAAGTA GTACTTCTTT
  GAATGGTACA CGTGATCAGA ATTTAGTAAT GTTTTCCAGG GTAGATCTGG TGTTCTTTCT
  TCTGCACTGA CCTGGGAACC GAACTTATGT CACAAGTGGG AGAAAGACCG ACCCGGGAGC
  Y
  AAGGGCACTG AGTCAGGGTA CTGAGTTCAA AACTAGATTT ATCTGCCTGC AGACAGAAGG
  TCAAGGGTCC CGAGGAACTG AGAACTCATT CTCTTTAACC TGTTGTTTCA AGTGGCTAAG
  GTGGTGTGTG GGGAGGGGTG GCAGCAGTGT AGAATAATCT GAGAGCCTTG GAGACAGGCG
  TGGGCTGAAC TCCAAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147681719	ENSMUSSNP581116	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46542381					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139517473 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	Intron
Rr603302	regulatory region 603302	33 bp distal
Rr603303	regulatory region 603303	176 bp distal
Rr603304	regulatory region 603304	1046 bp proximal