rs46540552 SNP Detail

Summary

• ID
  rs46540552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155967945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCACAAAT GTCCAATTTA TTGATCCAAT GAGAACTTTT
  TATTGTGGTT ACTAACAGGG TATGGGTGAG GGGTTACTTG CAAGGAACAG GGAAAACTCA
  R
  AAATAGCAAC ATCACCAGAA CACATGTGAA ACTTCCTTGG AGATTTCTAT CCAGCTTGGA
  GGCAGCTCCA CCAATTTGGA CCAGCAGGCC ATTCTTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148119350	ENSMUSSNP3806256	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321443599	CHEV_4_155257597	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46540552					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155967945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606605	regulatory region 606605			165 bp proximal