rs46540129 SNP Detail

Summary

• ID
  rs46540129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143626651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACCCC AATAAAAAGA
  GTGAAGAGTG ATGGGGAAGC CCAGTGCACA TGAGAGTACA CAAGAGAAGA TGCAGTTGTG
  TTTTAGGTAG GCATCACTAC ACGTGGAGCA GGACTGTGGT CGTGTCCTCT CGGTGTGTAT
  GGGCAGCAGT AGCATGTGAG GCAGAAGCAG GTTGTCTGGA AGGTGTTTAC TCTGAAGGCC
  R
  GTGCATAGAT ACAAGAAGCT GAGCTAAATG AACAGAGCTG TGGGAGATCT ATTTCTGAGG
  GACATTGGAT GCCAGACCGT CAGCCCCTGT TCACTCTGAA GTTCTGACAG ATAGCAAAGT
  TAAAAACAAC TCCCAACAGG ACAGGCTAGG AAAAGGGGAT GGGGCAGGTA GTGAGATGGT
  TGCATTGTAA GTAAATTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852191	NES15998181	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46540129					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852191	NES15998181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143626651 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624265	regulatory region 624265	1668 bp distal
Rr624266	regulatory region 624266	722 bp distal
Rr624267	regulatory region 624267	1444 bp proximal