rs46539021 SNP Detail

Summary

• ID
  rs46539021
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60958738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTAGAT ATTTTCTTTA
  TCTACATTTC AAATGCTATC CCAAAAGTAC CCTATACCCT TCCCCTGCCC TGCTCCCCAA
  CCCATCCACT CCCACTTAAT CTTTCTTTTC TGCAATAGAT TTGGGTCTCT AAGAAATGAC
  TACATTGAAT TCCTATCCCC AATACTGTTA GAGATTTGGG AGCTGATTAG TTCACGTAGT
  T
  GCTGTTCCTG GTTGTCAACT TGACTATATC TGGAATGAAC TACAATCCAG AATTGGAAGG
  CTCACCTGTG ATCCAGATCT TGAGGCTGGG AGAAATAAGT TTCTGACATG GATTTTGGCC
  TGGAGATTTT GAGGCATAGT GGCTATGAGT CCCAGGAATC CAAGGCAAGG AGAGCTGAGT
  TTAAGGTCAT CTGGGAAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss135222413	ENSMUSSNP3307008	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs46539021					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60958738 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	687 bp distal